Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs17699510 chr17:45837071 T/C 1.02E-6 504 21.87 21.4 3.97 KM Plot
LUAD rs17772855 chr17:45847773 T/C 1.02E-6 504 21.87 21.4 3.97 KM Plot
LUAD rs17773055 chr17:45858927 C/G 5.73E-7 505 21.88 20.83 3.97 KM Plot
LUAD rs17804899 chr12:9531279 T/A 0 501 22.13 20.63 0.32 KM Plot
LUAD rs190053 chr17:28896442 A/G 4.67E-6 490 6.23 24.13 20.97 KM Plot
LUAD rs2071034 chr11:62623019 A/G 2.46E-5 504 21.73 23.03 7.7 KM Plot
LUAD rs2071035 chr11:62623017 C/A 2.57E-5 505 21.82 21.9 7.7 KM Plot
LUAD rs2071036 chr11:62620037 C/T 2.57E-5 505 21.82 21.9 7.7 KM Plot
LUAD rs216462 chr17:28895897 T/C 4.67E-6 490 6.23 24.13 20.97 KM Plot
LUAD rs2269353 chr11:62623214 G/A 2.46E-5 504 21.73 23.03 7.7 KM Plot
LUAD rs2282538 chr11:62599732 C/T 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs2388780 chr10:132122773 C/T 7.95E-7 499 21.82 20.97 2.95 KM Plot
LUAD rs2472165 chr10:38347806 C/G 1.86E-6 505 11.43 27.87 20.87 KM Plot
LUAD rs251302 chr5:65300227 T/C 3.64E-10 490 2.9 22.87 21.77 KM Plot
LUAD rs33953169 chr10:25318480 TAA/T 2.3E-11 499 21.7 25.37 2.47 KM Plot